Many of the steps we have been discussing today are common to almost all software solutions availabe for tha analysis of metabolomics data:
xcms,MzMine,MSDial)XCMS OnlineThe French metabolomics network also provide software for pathway analysis and visualization
MetaboAnalyst - statistical, functional and integrative analysis of metabolomics data
As part of the deNBI Center for integrative Bioinformatics, OpenMS offers an open-source software C++ library (+ python bindings) for LC/MS data management and analyses
KNIME Analytics Platform is the open source software for creating data science
PhenoMeNal (Phenome and Metabolome aNalysis) is a comprehensive and standardised e-infrastructure that supports the data processing and analysis pipelines for molecular phenotype data generated by metabolomics applications
MZmine 3 is an open-source software for mass-spectrometry data processing, with the main focus on LC-MS data.
MS-DIAL was launched as a universal program for untargeted metabolomics that supports multiple instruments (GC/MS, GC/MS/MS, LC/MS, and LC/MS/MS) and MS vendors (Agilent, Bruker, LECO, Sciex, Shimadzu, Thermo, and Waters)